API for thijsjanzen/GenomeAdmixR
Simulate Admixture of Genomes
| Global functions | |
|---|---|
| GenomeAdmixR | Man page |
| GenomeAdmixR-package | Man page |
| ancestry_module | Man page Source code |
| calc_allele_frequencies | Source code Source code |
| calculate_allele_frequencies | Man page Source code |
| calculate_allele_spectrum_cpp | Source code |
| calculate_average_ld | Man page Source code |
| calculate_dist_junctions | Man page Source code |
| calculate_fst | Man page Source code |
| calculate_heterozygosity | Man page Source code |
| calculate_heterozygosity_cpp | Source code |
| calculate_ld | Man page Source code |
| calculate_marker_frequency | Man page Source code |
| check_for_bases | Source code |
| check_initial_frequencies | Source code |
| check_input_pop | Source code |
| check_markers | Source code |
| check_select_matrix | Source code |
| combine_input_data | Man page Source code |
| convert_dna_to_numeric | Source code |
| convert_map_data_to_numeric | Source code |
| convert_to_dna | Source code |
| convert_to_numeric_matrix | Source code |
| convert_vcf_to_alleles | Source code |
| count_ab | Source code |
| create_artificial_genomeadmixr_data | Man page Source code |
| create_iso_female | Man page Source code |
| create_loci_matrix | Source code |
| create_pop_class | Source code |
| create_random_markers | Source code |
| create_recombination_map | Source code |
| default_params_doc | Man page Source code |
| dgrp2.3R.5k.data | Man page |
| findtype | Source code |
| generate_output_list_one_pop | Source code |
| generate_output_list_two_pop | Source code |
| get_marker_range | Source code |
| increase_ancestor | Source code |
| iso_female_ancestry | Man page Source code |
| iso_female_sequence | Man page Source code |
| load_population | Man page Source code |
| migration_settings | Man page Source code |
| plink_to_genomeadmixr_data | Man page Source code |
| plot.individual | Man page Source code |
| plot_chromosome | Man page Source code |
| plot_difference_frequencies | Man page Source code |
| plot_dist_junctions | Man page Source code |
| plot_frequencies | Man page Source code |
| plot_joyplot_frequencies | Man page Source code |
| plot_over_time | Man page Source code |
| plot_start_end | Man page Source code |
| population_to_vector | Source code |
| print.genomeadmixr_data | Man page Source code |
| print.individual | Man page Source code |
| print.population | Man page Source code |
| print_substitution_matrix | Source code |
| read_input_data | Man page Source code |
| read_ped | Source code |
| read_vcf | Source code |
| sample_output_matrix | Source code |
| save_population | Man page Source code |
| sequence_module | Man page Source code |
| simulate_admixture | Man page Source code |
| simulate_ancestry | Man page Source code |
| simulate_ancestry_migration | Man page Source code |
| simulate_ancestry_until | Source code |
| simulate_cpp | Source code |
| simulate_emp_cpp | Source code |
| simulate_migration_cpp | Source code |
| simulate_migration_emp_cpp | Source code |
| simulate_sequence | Man page Source code |
| simulate_sequence_migration | Man page Source code |
| simulate_sequence_until | Source code |
| simulation_data_to_genomeadmixr_data | Man page Source code |
| simulation_data_to_genomeadmixr_data_cpp | Source code |
| simulation_data_to_plink_cpp | Source code |
| vcfR_to_genomeadmixr_data | Man page Source code |
| vcf_to_matrix_cpp | Source code |
| verify_genomeadmixr_data | Source code |
| verify_individual | Source code |
| verify_population | Source code |
| verify_substitution_matrix | Source code |
| write_as_plink | Man page Source code |
