Man pages for thijsjanzen/GenomeAdmixR
Simulate Admixture of Genomes

calculate_allele_frequenciesCalculate allele frequencies
calculate_average_ldCalculates the ld between two alleles
calculate_dist_junctionscollect the full distribution of junctions in the population
calculate_fstCalculate FST
calculate_LDCalculate linkage disequilibrium statistics This function...
calculate_marker_frequencyCalculate allele frequencies at a specific marker location
calculate_tajima_dCalculate Tajima's d
create_iso_femaleCreate isofemale
findtypefind local ancestry
GenomeAdmixR-packageThis package simulates admixture of ancestry
joyplot_frequenciesmake a joy plot of the distribution of allele frequencies...
load_populationLoad a population from file
plot_chromosomeplots a chromosome
plot_difference_frequenciesPlot the change in frequency between the start and end of a...
plot_dist_junctionsplot the distribution of junctions
plot_frequenciesPlot the frequencies of all ancestors along the genome.
plot.individualplot the genome of an individual
plot_over_timePlot the frequencies of all ancestors over time
plot_start_endPlot both the starting frequencies and the final frequencies...
print.individualprint an individual to the console
print.populationprint a population object
save_populationSave a population to file
simulate_admixtureIndividual based simulation of the breakdown of contiguous...
simulate_admixture_migrationIndividual based simulation of the breakdown of contiguous...
simulate_admixture_untilSimulate admixture until
verify_individualverify that an individual is correct
verify_populationverify that a population is correct
thijsjanzen/GenomeAdmixR documentation built on Oct. 20, 2019, 6:06 a.m.