Simulate Admixture of Genomes

calculate_allele_frequencies | Calculate allele frequencies |

calculate_average_ld | Calculates the ld between two alleles |

calculate_dist_junctions | collect the full distribution of junctions in the population |

calculate_fst | Calculate FST |

calculate_LD | Calculate linkage disequilibrium statistics This function... |

calculate_marker_frequency | Calculate allele frequencies at a specific marker location |

calculate_tajima_d | Calculate Tajima's d |

create_iso_female | Create isofemale |

findtype | find local ancestry |

GenomeAdmixR-package | This package simulates admixture of ancestry |

joyplot_frequencies | make a joy plot of the distribution of allele frequencies... |

load_population | Load a population from file |

plot_chromosome | plots a chromosome |

plot_difference_frequencies | Plot the change in frequency between the start and end of a... |

plot_dist_junctions | plot the distribution of junctions |

plot_frequencies | Plot the frequencies of all ancestors along the genome. |

plot.individual | plot the genome of an individual |

plot_over_time | Plot the frequencies of all ancestors over time |

plot_start_end | Plot both the starting frequencies and the final frequencies... |

print.individual | print an individual to the console |

print.population | print a population object |

save_population | Save a population to file |

simulate_admixture | Individual based simulation of the breakdown of contiguous... |

simulate_admixture_migration | Individual based simulation of the breakdown of contiguous... |

simulate_admixture_until | Simulate admixture until |

verify_individual | verify that an individual is correct |

verify_population | verify that a population is correct |

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