plot_chromosome: plots a chromosome

In thijsjanzen/GenomeAdmixR: Simulate Admixture of Genomes

plots a chromosome

Description

This function plots a chromosome in the range [xmin, xmax]. Colors indicate different ancestry.

Usage

plot_chromosome(chrom, xmin = 0, xmax = 1)

Arguments

chrom	object of type chromosome, typically a table with two columns. The first column indicates the start of an ancestry block (location in Morgan), the second column indicates the ancestry type.
xmin	minimum value of the range, default = 0.
xmax	maximum value of the range, default = 1.

Value

No return value

Examples

wildpop =  simulate_admixture(
   module = ancestry_module(number_of_founders = 10, morgan = 1),
   pop_size = 1000,
   total_runtime = 10)

isofemale <- create_iso_female(
                 module = ancestry_module(input_population = wildpop,
                                          morgan = 1),
                 n = 1,
                 inbreeding_pop_size = 100,
                 run_time = 10)

plot_chromosome(chrom = isofemale[[1]]$chromosome1)
# and a detail of the chromosome:
plot_chromosome(chrom = isofemale[[1]]$chromosome1,
                xmin = 0.4,
                xmax = 0.6)

thijsjanzen/GenomeAdmixR documentation built on Feb. 16, 2024, 7:27 p.m.