Calculate the relative frequency of each ancestor in the population at a specific marker location
Population for which to estimate allele frequencies at the given marker
A vector or scalar of location(s) along the chromosome for which allele frequencies are to be calculated. Locations are in Morgan.
A tibble containing the frequency of each present ancestor at the provided location. Ancestors with frequency = 0 are dropped out of the table. The tibble contains three columns: location, ancestor and frequency.
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## Not run: number_founders = 20 wildpop = simulate_admixture(pop_size = 1000, number_of_founders = number_founders, total_runtime = 10, morgan = 1, seed = 666) calculate_marker_frequency(wildpop, 0.5) frequencies <- calculate_marker_frequency(wildpop, seq(0.4, 0.5, by = 0.001)) ggplot(frequencies, aes(x = location, y = frequency, col = ancestor)) + geom_step() ## End(Not run)
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