dgrp2.3R.5k.data: A subset of sequencing data from the Drosophila Genetics...

In thijsjanzen/GenomeAdmixR: Simulate Admixture of Genomes

A subset of sequencing data from the Drosophila Genetics Reference Panel

Description

This data set contains sequences from the 3R chromosome. Included are 4603 SNPs with at least 0.05 minor allele frequency, sequenced across 410 isofemale lines. Sequences were downloaded from <http://dgrp2.gnets.ncsu.edu/data.html>.

Usage

data("dgrp2.3R.5k.data")

Format

genomeadmixr_data object

References

Mackay, T., Richards, S., Stone, E. et al. The Drosophila melanogaster Genetic Reference Panel. Nature 482, 173–178 (2012). <https://doi.org/10.1038/nature10811>

Examples

data("dgrp2.3R.5k.data")
simulate_admixture(
       module = sequence_module(molecular_data = dgrp2.3R.5k.data),
       pop_size = 100,
       total_runtime = 10)

thijsjanzen/GenomeAdmixR documentation built on Feb. 16, 2024, 7:27 p.m.