Man pages for thijsjanzen/isoSIM
Simulate Linkage Disequilibrium Along Chromosomes in Isofemale Lines
| calculate_allele_frequencies | Calculate allele frequencies |
| calculate_fst | Calculate FST |
| calculate_LD | Calculate LD statistics |
| calculate_marker_frequency | Calculate allele frequencies at a specific marker location |
| calculate_tajima_d | Calculate Tajima's d |
| create_admixed_individuals | create a population of admixed individuals |
| create_iso_female | Create isofemale |
| create_population | Create a population |
| create_population_from_individuals | Create a population from isofemale individuals |
| create_population_selection | Create a population taking into account selection |
| create_two_populations_migration | Create two populations, linked by migration |
| increase_ancestor | increase the ancestor index |
| isoSIM-internal | Internal isoSIM functions |
| isoSIM-package | This package simulates the generation of an isofemale line |
| joyplot_frequencies | make a joy plot of the distribution of allele frequencies... |
| load_population | Load a population from file |
| plot_chromosome | plot a chromosome |
| plot_difference_frequencies | Plot the change in frequency between the start and end of a... |
| plot_start_end | Plot both the starting frequencies and the final frequencies... |
| save_population | Save a population to file |
| select_population | Simulate a population, given selection for a specific... |
| simulate_admixture | Individual based simulation of the breakdown of contiguous... |
| simulate_admixture_until | Simulate admixture until reaching threshold divergence |
