Files in thijsjanzen/isoSIM
Simulate Linkage Disequilibrium Along Chromosomes in Isofemale Lines
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/FST.R
R/LD.R
R/RcppExports.R
R/calculate_tajima_d.R
R/create_populations.R
R/individual_class.R
R/isoFemale.R
R/joyplot.R
R/population_calculations.R
R/select_population.R
R/simulate_admixture.R
R/simulate_admixture_until.R
README.md
codecov.R
codecov.yml
man/calculate_LD.Rd
man/calculate_allele_frequencies.Rd
man/calculate_fst.Rd
man/calculate_marker_frequency.Rd
man/calculate_tajima_d.Rd
man/create_admixed_individuals.Rd
man/create_iso_female.Rd
man/create_population.Rd
man/create_population_from_individuals.Rd
man/create_population_selection.Rd
man/create_two_populations_migration.Rd
man/increase_ancestor.Rd
man/isoSIM-internal.Rd
man/isoSIM-package.Rd
man/joyplot_frequencies.Rd
man/load_population.Rd
man/plot_chromosome.Rd
man/plot_difference_frequencies.Rd
man/plot_start_end.Rd
man/save_population.Rd
man/select_population.Rd
man/simulate_admixture.Rd
man/simulate_admixture_until.Rd
src/Fish.cpp
src/Fish.h
src/RcppExports.cpp
src/calculate_allele_spectrum.cpp
src/main.h
src/main_functions.cpp
src/random_functions.cpp
src/random_functions.h
src/selection.cpp
src/selection.h
src/simulate.cpp
tests/testthat.R
tests/testthat/.Rapp.history
tests/testthat/test-LD.R
tests/testthat/test-allele_frequencies.R
tests/testthat/test-createPopulations.R
tests/testthat/test-fst.R
tests/testthat/test-isoFemales.R
tests/testthat/test-junctions.R
tests/testthat/test-save_load.R
tests/testthat/test-selection.R
tests/testthat/test-simulate.R
tests/testthat/test-simulate_admixture.R
tests/testthat/test-simulate_admixture_until.R
tests/testthat/test-tajima.R
vignettes/Demonstrate_isofemales.Rmd
vignettes/Demonstrate_isofemales.html
vignettes/Joyplots.Rmd
vignettes/Joyplots.html
vignettes/Walkthrough.Rmd
vignettes/Walkthrough.html
