R/RcppExports.R

In thijsjanzen/isoSIM: Simulate Linkage Disequilibrium Along Chromosomes in Isofemale Lines

# Generated by using Rcpp::compileAttributes() -> do not edit by hand
# Generator token: 10BE3573-1514-4C36-9D1C-5A225CD40393

calculate_allele_spectrum_cpp <- function(v1, step_size, progress_bar) {
    .Call('_isoSIM_calculate_allele_spectrum_cpp', PACKAGE = 'isoSIM', v1, step_size, progress_bar)
}

create_population_cpp <- function(pop_size, number_of_founders, total_runtime, morgan, progress_bar, track_junctions) {
    .Call('_isoSIM_create_population_cpp', PACKAGE = 'isoSIM', pop_size, number_of_founders, total_runtime, morgan, progress_bar, track_junctions)
}

create_isofemale_line_cpp <- function(v, pop_size, total_runtime, morgan, progress_bar) {
    .Call('_isoSIM_create_isofemale_line_cpp', PACKAGE = 'isoSIM', v, pop_size, total_runtime, morgan, progress_bar)
}

create_two_populations_migration_cpp <- function(pop_size, number_of_founders, total_runtime, morgan, migration, progress_bar) {
    .Call('_isoSIM_create_two_populations_migration_cpp', PACKAGE = 'isoSIM', pop_size, number_of_founders, total_runtime, morgan, migration, progress_bar)
}

test_fish_functions <- function() {
    invisible(.Call('_isoSIM_test_fish_functions', PACKAGE = 'isoSIM'))
}

create_population_selection_cpp <- function(select, pop_size, number_of_founders, total_runtime, morgan, progress_bar, track_frequency, track_markers, multiplicative_selection) {
    .Call('_isoSIM_create_population_selection_cpp', PACKAGE = 'isoSIM', select, pop_size, number_of_founders, total_runtime, morgan, progress_bar, track_frequency, track_markers, multiplicative_selection)
}

select_population_cpp <- function(v1, selectM, population_size, run_time, morgan, progress_bar, track_frequency, track_markers, multiplicative_selection) {
    .Call('_isoSIM_select_population_cpp', PACKAGE = 'isoSIM', v1, selectM, population_size, run_time, morgan, progress_bar, track_frequency, track_markers, multiplicative_selection)
}

simulate_cpp <- function(input_population, select, pop_size, number_of_founders, starting_proportions, total_runtime, morgan, progress_bar, track_frequency, track_markers, track_junctions, multiplicative_selection) {
    .Call('_isoSIM_simulate_cpp', PACKAGE = 'isoSIM', input_population, select, pop_size, number_of_founders, starting_proportions, total_runtime, morgan, progress_bar, track_frequency, track_markers, track_junctions, multiplicative_selection)
}

create_pop_admixed_cpp <- function(num_individuals, num_ancestors, population_size, size_in_morgan) {
    .Call('_isoSIM_create_pop_admixed_cpp', PACKAGE = 'isoSIM', num_individuals, num_ancestors, population_size, size_in_morgan)
}