Description Usage Arguments Value Author(s) Examples
This function plots the distribution of allele frequencies within a region over time, making use of a 'joyplot'
1 | joyplot_frequencies(frequencies, time_points, picked_ancestor)
|
frequencies |
A tibble containing four columns: |
time_points |
A sequence of time points for which the user wants to create the joyplot |
picked_ancestor |
Default is "ALL", where different colors indicate different ancestors. Alternatively, for clarity, the user can specify a specific ancestral allele, and only that allele is plotted |
a ggplot2 object
Thijs Janzen
1 2 3 4 5 6 7 8 9 10 11 12 13 14 | s <- 0.01
select_matrix <- matrix(nrow = 1, ncol = 5)
select_matrix[1, ] <- c(0.25, 1.0, 1 + 0.5 * s, 1 + s, 0)
markers <- seq(from = 0.2, to = 0.3, length.out = 100)
selected_pop <- create_population_selection(pop_size = 1000,
number_of_founders = 10,
total_runtime = 11,
morgan = 1,
select_matrix,
seed = 1234)
joyplot_frequencies(selected_pop$frequencies,
0:11, picked_ancestor = "ALL")
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