create_population: Create a population

In thijsjanzen/isoSIM: Simulate Linkage Disequilibrium Along Chromosomes in Isofemale Lines

Description

Creates a population of individuals

Usage

create_population(pop_size, number_of_founders,
                       total_runtime, morgan,
                       seed, progress_bar,
                       track_junctions)

Arguments

pop_size	Total number of diploid individuals
number_of_founders	Number of unique ancestors
total_runtime	Number of generations allowed for inbreeding
morgan	Length of the chromosome in Morgan (e.g. the number of crossovers during meiosis)
seed	Seed of the pseudo-random number generator
progress_bar	Displays a progress_bar if TRUE. Default value is TRUE
track_junctions	Track the average number of junctions over time if TRUE

Value

A population structure called "population", and a vector called "junctions" if track_junctions = TRUE

Author(s)

Thijs Janzen

Examples

wildpop =  create_population(pop_size = 100,
                             number_of_founders = 10,
                             total_runtime = 10,
                             morgan = 1,
                             seed = 42,
                             progress_bar = TRUE,
                             track_junctions = FALSE)

thijsjanzen/isoSIM documentation built on May 29, 2019, 10:39 a.m.