plot_start_end: Plot both the starting frequencies and the final frequencies...

Description Usage Arguments Value Author(s) Examples

Description

This function plots the distribution of both the starting and the final frequencies in one plot

Usage

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plot_start_end(results, picked_ancestor = "ALL")

Arguments

results

An object which is the result of select_population or create_population_selection, being a list with four properties: population, frequencies, initial_frequencies and final frequencies

picked_ancestor

Default is "ALL", where different colors indicate different ancestors. Alternatively, for clarity, the user can specify a specific ancestral allele, and only that allele is plotted

Value

a ggplot2 object

Author(s)

Thijs Janzen

Examples

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  s <- 0.01
  select_matrix <- matrix(nrow = 1, ncol = 5)
  select_matrix[1, ] <- c(0.25, 1.0, 1 + 0.5 * s, 1 + s, 0)

  track_freq <- c(0.2, 0.3, 100)

  selected_pop <- isoSIM::create_population_selection(pop_size = 1000,
                                                    number_of_founders = 10,
                                                    total_runtime = 11,
                                                    morgan = 1,
                                                    select_matrix,
                                                    seed = 1234,
                                                    track_frequency = track_freq)
  plot_start_end(selected_pop,
                  picked_ancestor = "ALL")

thijsjanzen/isoSIM documentation built on May 29, 2019, 10:39 a.m.