plot_start_end: Plot both the starting frequencies and the final frequencies...

In thijsjanzen/isoSIM: Simulate Linkage Disequilibrium Along Chromosomes in Isofemale Lines

Description

This function plots the distribution of both the starting and the final frequencies in one plot

Usage

plot_start_end(results, picked_ancestor = "ALL")

Arguments

results	An object which is the result of select_population or create_population_selection, being a list with four properties: population, frequencies, initial_frequencies and final frequencies
picked_ancestor	Default is "ALL", where different colors indicate different ancestors. Alternatively, for clarity, the user can specify a specific ancestral allele, and only that allele is plotted

Value

a ggplot2 object

Author(s)

Thijs Janzen

Examples

  s <- 0.01
  select_matrix <- matrix(nrow = 1, ncol = 5)
  select_matrix[1, ] <- c(0.25, 1.0, 1 + 0.5 * s, 1 + s, 0)

  track_freq <- c(0.2, 0.3, 100)

  selected_pop <- isoSIM::create_population_selection(pop_size = 1000,
                                                    number_of_founders = 10,
                                                    total_runtime = 11,
                                                    morgan = 1,
                                                    select_matrix,
                                                    seed = 1234,
                                                    track_frequency = track_freq)
  plot_start_end(selected_pop,
                  picked_ancestor = "ALL")

thijsjanzen/isoSIM documentation built on May 29, 2019, 10:39 a.m.