Files in tidymass/metpath
Pathway analysis for metabolomics data
.RData (1)
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS
NEWS.md
R/1_metpath_logo.R
R/2_all_generics.R
R/attach.R
R/conflicts.R
R/data.R
R/dplyr-enrich_result.R
R/dplyr-pathway_database.R
R/enrich_hmdb.R
R/enrich_kegg.R
R/enrich_result_class.R
R/filter_pathways.R
R/global_variables.R
R/graphics.R
R/hmdb_database.R
R/kegg_database.R
R/pathway_database-class.R
R/pathway_database-methods.R
R/reactome_database.R
R/utils.R
R/zzz.R
README.md
_pkgdown.yml
data/hmdb_compound_database.rda
data/hmdb_pathway.rda
data/kegg_compound_database.rda
data/kegg_hsa_pathway.rda
data/query_id_hmdb.rda
data/query_id_kegg.rda
docs/404.html
docs/LICENSE-text.html
docs/LICENSE.html
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/articles/contact_us.html
docs/articles/contact_us_files/Proj4Leaflet-1.0.1/proj4leaflet.js
docs/articles/contact_us_files/header-attrs-2.9/header-attrs.js
docs/articles/contact_us_files/htmlwidgets-1.5.3/htmlwidgets.js
docs/articles/contact_us_files/htmlwidgets-1.5.4/htmlwidgets.js
docs/articles/contact_us_files/jquery-1.12.4/jquery.min.js
docs/articles/contact_us_files/leaflet-1.3.1/images/layers-2x.png
docs/articles/contact_us_files/leaflet-1.3.1/images/layers.png
docs/articles/contact_us_files/leaflet-1.3.1/images/marker-icon-2x.png
docs/articles/contact_us_files/leaflet-1.3.1/images/marker-icon.png
docs/articles/contact_us_files/leaflet-1.3.1/images/marker-shadow.png
docs/articles/contact_us_files/leaflet-1.3.1/leaflet.css
docs/articles/contact_us_files/leaflet-1.3.1/leaflet.js
docs/articles/contact_us_files/leaflet-binding-2.0.4.1/leaflet.js
docs/articles/contact_us_files/leaflet-binding-2.1.0/leaflet.js
docs/articles/contact_us_files/leaflet-binding-2.1.1/leaflet.js
docs/articles/contact_us_files/leafletfix-1.0.0/leafletfix.css
docs/articles/contact_us_files/proj4-2.6.2/proj4.min.js
docs/articles/contact_us_files/rstudio_leaflet-1.3.1/images/1px.png
docs/articles/contact_us_files/rstudio_leaflet-1.3.1/rstudio_leaflet.css
docs/articles/hmdb_pathway_enrichment.html
docs/articles/hmdb_pathway_enrichment_files/figure-html/unnamed-chunk-10-1.png
docs/articles/hmdb_pathway_enrichment_files/figure-html/unnamed-chunk-11-1.png
docs/articles/hmdb_pathway_enrichment_files/figure-html/unnamed-chunk-8-1.png
docs/articles/hmdb_pathway_enrichment_files/figure-html/unnamed-chunk-9-1.png
docs/articles/hmdb_pathway_enrichment_files/header-attrs-2.9/header-attrs.js
docs/articles/index.html
docs/articles/install.html
docs/articles/kegg_pathway_enrichment.html
docs/articles/kegg_pathway_enrichment_files/figure-html/unnamed-chunk-10-1.png
docs/articles/kegg_pathway_enrichment_files/figure-html/unnamed-chunk-11-1.png
docs/articles/kegg_pathway_enrichment_files/figure-html/unnamed-chunk-9-1.png
docs/articles/kegg_pathway_enrichment_files/header-attrs-2.9/header-attrs.js
docs/articles/metpath.html
docs/articles/metpath_files/header-attrs-2.9/header-attrs.js
docs/articles/pathway_database.html
docs/articles/pathways_database.html
docs/articles/pathways_database_files/header-attrs-2.9/header-attrs.js
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/docsearch.json
docs/favicon-16x16.png
docs/favicon-32x32.png
docs/favicon.ico
docs/index.html
docs/link.svg
docs/logo.png
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/enrich_bar_plot.html
docs/reference/enrich_hmdb.html
docs/reference/enrich_kegg.html
docs/reference/enrich_network.html
docs/reference/enrich_result-class.html
docs/reference/enrich_result_class-class.html
docs/reference/enrich_scatter_plot.html
docs/reference/extract-pathway_database.html
docs/reference/figures/logo.png
docs/reference/figures/metpath_logo.png
docs/reference/filter_pathway.html
docs/reference/get_hmdb_compound.html
docs/reference/get_hmdb_pathway.html
docs/reference/get_kegg_compound.html
docs/reference/get_kegg_pathway.html
docs/reference/get_pathway_class.html
docs/reference/hmdb_compound_database.html
docs/reference/hmdb_pathway.html
docs/reference/index.html
docs/reference/kegg_compound_database.html
docs/reference/kegg_hsa_pathway.html
docs/reference/metpath_conflicts.html
docs/reference/metpath_logo.html
docs/reference/metpath_packages.html
docs/reference/pathway_database-class.html
docs/reference/pathway_database_class-class.html
docs/reference/query_id_hmdb.html
docs/reference/query_id_kegg.html
docs/reference/reexports.html
docs/reference/set_label.html
docs/sitemap.xml
man/enrich_bar_plot.Rd
man/enrich_hmdb.Rd
man/enrich_kegg.Rd
man/enrich_network.Rd
man/enrich_result-class.Rd
man/enrich_scatter_plot.Rd
man/figures/logo.png
man/figures/metpath_logo.png
man/filter_pathway.Rd
man/get_hmdb_compound.Rd
man/get_hmdb_pathway.Rd
man/get_kegg_compound.Rd
man/get_kegg_pathway.Rd
man/get_pathway_class.Rd
man/hmdb_compound_database.Rd
man/hmdb_pathway.Rd
man/kegg_compound_database.Rd
man/kegg_hsa_pathway.Rd
man/metpath_conflicts.Rd
man/metpath_logo.Rd
man/metpath_packages.Rd
man/pathway_database-class.Rd
man/query_id_hmdb.Rd
man/query_id_kegg.Rd
man/reexports.Rd
man/set_label.Rd
metpath.Rproj
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
tests/testthat.R
tests/testthat/test-dplyr-filter.R
vignettes/contact_us.Rmd
vignettes/hmdb_pathway_enrichment.Rmd
vignettes/install.Rmd
vignettes/kegg_pathway_enrichment.Rmd
vignettes/metpath.Rmd
vignettes/pathway_database.Rmd
