calculate_redundance: Calculate Redundancy in Metabolite Annotation
In tidymass/metpath: Pathway analysis for metabolomics data
calculate_redundance R Documentation
Calculate Redundancy in Metabolite Annotation
Description
This function calculates redundancy metrics in a metabolite annotation table.
It evaluates the number of distinct compound classes per compound and the number
of compounds assigned to each peak.
Usage
calculate_redundance(annotation_table)
Arguments
annotation_table
A data frame containing metabolite annotations, including 'Lab.ID', 'compound_class', and 'variable_id'.
Value
A numeric vector of length two:
- The first value represents the average number of compound classes per compound ('redundancy1').
- The second value represents the average number of compounds assigned to each peak ('redundancy2').
tidymass/metpath documentation built on June 1, 2025, 10:05 p.m.
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| calculate_redundance | R Documentation |
Calculate Redundancy in Metabolite Annotation
Description
This function calculates redundancy metrics in a metabolite annotation table. It evaluates the number of distinct compound classes per compound and the number of compounds assigned to each peak.
Usage
calculate_redundance(annotation_table)
Arguments
annotation_table |
A data frame containing metabolite annotations, including 'Lab.ID', 'compound_class', and 'variable_id'. |
Value
A numeric vector of length two: - The first value represents the average number of compound classes per compound ('redundancy1'). - The second value represents the average number of compounds assigned to each peak ('redundancy2').
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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