identify_metabolic_modules: Identify Metabolic Modules

In tidymass/metpath: Pathway analysis for metabolomics data

Identify Metabolic Modules

Description

This function identifies metabolic modules from a metabolic reaction network. It applies a clustering algorithm to detect modules based on network structure. Large modules are recursively split, and weakly connected hidden metabolites are removed.

Usage

identify_metabolic_modules(
  sub_metabolic_network,
  detected_metabolites,
  hidden_metabolites
)

Arguments

sub_metabolic_network	A metabolic network represented as a 'tbl_graph' object.
detected_metabolites	A character vector of detected metabolite IDs.
hidden_metabolites	A character vector of hidden metabolite IDs.

Value

A list of metabolic modules, where each module is a character vector containing the metabolite IDs within the module.

tidymass/metpath documentation built on June 1, 2025, 10:05 p.m.