pathway_database-class: Pathway Database Class

In tidymass/metpath: Pathway analysis for metabolomics data

Pathway Database Class

Description

Defines the 'pathway_database' class, which stores information about biological pathways, including genes, compounds, proteins, references, and related diseases.

Slots

database_info

A list containing metadata about the pathway database, such as source and version.

pathway_id

A vector of pathway IDs.

pathway_name

A vector of pathway names.

describtion

A list containing descriptions of the pathways.

pathway_class

A list categorizing pathways into different functional classes.

gene_list

A list of genes associated with each pathway.

compound_list

A list of compounds (metabolites) associated with each pathway.

protein_list

A list of proteins associated with each pathway.

reference_list

A list of references (e.g., publications) linked to each pathway.

related_disease

A list of diseases related to each pathway.

related_module

A list of pathway modules that are related or interconnected.

Author(s)

Xiaotao Shen ([e-mail])

tidymass/metpath documentation built on June 1, 2025, 10:05 p.m.