enrich_bar_plot | R Documentation |
Bar plot for enrich_result
enrich_bar_plot( object, x_axis = c("p_value_adjust", "p_value"), cutoff = 0.05, top = 10, axis.text.x.width = 15, axis.text.y.width = 15 )
object |
enrich_result object. |
x_axis |
"p_value_adjust or "p_value" |
cutoff |
cutoff for p_value_adjust or p_value. |
top |
top pathways to show. |
axis.text.x.width |
axis.text.x.width |
axis.text.y.width |
axis.text.y.width |
Xiaotao Shen shenxt1990@outlook.com
## Not run: data("kegg_hsa_pathway") remain_idx = kegg_hsa_pathway@pathway_class %>% unlist() %>% stringr::str_detect("Disease") %>% `!`() %>% which() pathway_database = filter_pathway(object = kegg_hsa_pathway, remain_idx = remain_idx[1:50]) data("query_id_kegg") kegg_enrichment = enrich_kegg( query_id = query_id_kegg, query_type = "compound", id_type = "KEGG", pathway_database = pathway_database, p_cutoff = 0.05, p_adjust_method = "BH", method = "hypergeometric", threads = 5 ) ## End(Not run)
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