Man pages for tidymass/metpath
Pathway analysis for metabolomics data
| annotate_isotope | Annotate Isotopes for a Given Molecular Formula |
| annotate_metabolites_fpa | Annotate Metabolites for Feature Pathway Analysis (FPA) |
| calculate_activity_score | Calculate Activity Scores for Metabolic Modules |
| calculate_activity_socre | Calculate Activity Score for Metabolic Modules |
| calculate_centrality | Calculate Node Centrality in a Graph |
| calculate_redundance | Calculate Redundancy in Metabolite Annotation |
| enrich_bar_plot | enrich_bar_plot |
| enrich_hmdb | enrich_kegg |
| enrich_kegg | enrich_kegg |
| enrich_metabolic_pathway | Metabolic Pathway Enrichment Analysis |
| enrich_network | enrich_network |
| enrich_pathways | Pathway Enrichment Analysis |
| enrich_result-class | An S4 class to represent pathways |
| enrich_scatter_plot | enrich_scatter_plot |
| extract-pathway_database | [ method |
| filter_pathway | filter_pathway |
| generate_null_activity_score_distribution | Generate Null Distribution of Activity Scores |
| get_hidden_metabolites | Identify Hidden Metabolites in a Metabolic Network |
| get_pathway_class | Extract Pathway Class |
| group_peaks_rt | Group Retention Time (RT) Peaks |
| identify_metabolic_modules | Identify Metabolic Modules |
| metpath_conflicts | Conflicts between the metpath and other packages |
| metpath_logo | metpath_logo |
| metpath_packages | List all packages in the metpath |
| pathway_database-class | Pathway Database Class |
| perform_fpa | Perform Feature-based Pathway Analysis (FPA) |
| plot_metabolic_module_fpa | Plot a Metabolic Module from FPA Results |
| plot_metabolic_network_fpa | Plot the Dysregulated Metabolic Network from FPA Results |
| reexports | Objects exported from other packages |
| remove_redundancy | Remove Redundant Annotations in Metabolite Data |
| score_peak_group | Score a Peak Group Based on Adduct and Polarity Information |
| set_label | set_label |
