Man pages for tkonopka/RGeneticThesaurus
Analysis of thesaurus-annotated genomic variants
| callBafChanges | Call sites showing BAF changes |
| callTrioDeNovo | Call sites de novo mutations from family trio data |
| compareVariants | Compare a set of variants (hits) with a set of expected... |
| isIndel | Determines whether a variant is a substitution or an indel |
| print.RGeneticThesaurusSet | Display information about an RGeneticThesaurus object |
| readBafFromFile | Read a table with baf from file |
| readClustersFromFile | Read a table with thesaurus clusters from file |
| readLinksFromFile | Read thesaurus links from a file |
| readThesaurusSet | Read a set of variants annotated using GeneticThesaurus |
| readVariantsFromFile | Read variants from disk |
| sortvcf | Sort a data frame of variants by chromosome and position |
