isIndel: Determines whether a variant is a substitution or an indel
In tkonopka/RGeneticThesaurus: Analysis of thesaurus-annotated genomic variants
Description
Given ref and alt alleles, this function returns a logical vector describing
whether or not the variants represent indels. The function regards entries like
rb="X" ab="Y" as not an indel. The function regards rb="X" and ab="Y,Z" as not an indel.
Other types of ref/alt combinations are reported as indels.
Usage
1
isIndel(rb, ab)
Arguments
rb
vector of reference bases
ab
vector of alternative bases
tkonopka/RGeneticThesaurus documentation built on May 31, 2019, 3:44 p.m.
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Description
Given ref and alt alleles, this function returns a logical vector describing whether or not the variants represent indels. The function regards entries like rb="X" ab="Y" as not an indel. The function regards rb="X" and ab="Y,Z" as not an indel. Other types of ref/alt combinations are reported as indels.
Usage
1 | isIndel(rb, ab)
|
Arguments
rb |
vector of reference bases |
ab |
vector of alternative bases |
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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