|callBafChanges||Call sites showing BAF changes|
|callTrioDeNovo||Call sites de novo mutations from family trio data|
|compareVariants||Compare a set of variants (hits) with a set of expected...|
|isIndel||Determines whether a variant is a substitution or an indel|
|print.RGeneticThesaurusSet||Display information about an RGeneticThesaurus object|
|readBafFromFile||Read a table with baf from file|
|readClustersFromFile||Read a table with thesaurus clusters from file|
|readLinksFromFile||Read thesaurus links from a file|
|readThesaurusSet||Read a set of variants annotated using GeneticThesaurus|
|readVariantsFromFile||Read variants from disk|
|sortvcf||Sort a data frame of variants by chromosome and position|
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