compareVariants: Compare a set of variants (hits) with a set of expected...
In tkonopka/RGeneticThesaurus: Analysis of thesaurus-annotated genomic variants
Description
This function compares two sets of variants and reports the number of true positives,
false positives and false negatives.
Usage
1
compareVariants(known, hits, links = NULL)
Arguments
known
data frame of known/expected variants; should contain column names (chr, position)
hits
data frame of hits/observed variants, should contain column names (chr, position)
links
four-column table with thesaurus links as obtained by function getLinksFromFile().
These links are assumed to correspond to variants given via the data frame hits.
tkonopka/RGeneticThesaurus documentation built on May 31, 2019, 3:44 p.m.
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Description
This function compares two sets of variants and reports the number of true positives, false positives and false negatives.
Usage
1 | compareVariants(known, hits, links = NULL)
|
Arguments
known |
data frame of known/expected variants; should contain column names (chr, position) |
hits |
data frame of hits/observed variants, should contain column names (chr, position) |
links |
four-column table with thesaurus links as obtained by function getLinksFromFile(). These links are assumed to correspond to variants given via the data frame hits. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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