CytoscapeWindow: CytoscapeWindow

In tmuetze/Bioconductor_RCy3_the_new_RCytoscape: Display and manipulate graphs in Cytoscape >= 3.3.0

Description

The constructor for the CytoscapeWindowClass

Usage

CytoscapeWindow(title, graph = new("graphNEL", edgemode='directed'),
                 host = "localhost", port = 1234, 
                 create.window = TRUE, overwriteWindow=FALSE, collectTimings=FALSE)

Arguments

title	A character string, this is the name you will see on the Cytoscape network window. Multiple windows with the same name are not permitted.
graph	A Bioconductor graph.
host	Defaults to 'localhost', this is the domain name of a machine which is running Cytoscape with the appropriate CyREST plugin.
port	Defaults to 1234, this may be any port to which CyREST is listening.
create.window	Defaults to TRUE, but if you want a CytoscapeWindow just to call what in Java we would call 'class methods' – getWindowList (), for instance, a CytoscapeWindow without an actual window can be useful.
overwriteWindow	Every Cytoscape window must have a unique title. If the title that you supply is already in use, this method will fail unless you specify TRUE for this parameter, in which case the pre-existing window with the same title will be deleted before this new one is created.
collectTimings	Defaults to FALSE. Will record and report the time required to send a graph to Cytoscape.

Value

An object of the CytoscapeWindow Class.

Author(s)

Tanja Muetze, Georgi Kolishovski, Paul Shannon

See Also

CytoscapeWindow existing.CytoscapeWindow, predictTimeToDisplayGraph

Examples

  ## Not run: 
  # first, delete existing windows to save memory:
  deleteAllWindows(CytoscapeConnection())

  cw <- CytoscapeWindow ('new.demo', new ('graphNEL'))

## End(Not run)

tmuetze/Bioconductor_RCy3_the_new_RCytoscape documentation built on May 31, 2019, 4:39 p.m.