addCyEdge: addCyEdge

In tmuetze/Bioconductor_RCy3_the_new_RCytoscape: Display and manipulate graphs in Cytoscape >= 3.3.0

Description

Given a CytoscapeWindow containing a (possibly empty) graph, this method adds an edge. Edge attributes are added separately, via successive calls to sendEdgeAttributesDirect. The two nodes must already exist in the Cytoscape network.

Usage

addCyEdge(obj, sourceNode, targetNode, edgeType, directed)

Arguments

obj	a CytoscapeWindowClass object.
sourceNode	a character string object.
targetNode	a character string object.
edgeType	a character string object.
directed	a boolean object.

Value

None.

Author(s)

Tanja Muetze, Georgi Kolishovski, Paul Shannon

See Also

sendEdgeAttributesDirect addCyNode

Examples

  ## Not run: 
  # first, delete existing windows to save memory:
  deleteAllWindows(CytoscapeConnection())
  window.name <- 'demo addCyEdge'
  cw <- CytoscapeWindow (window.name, graph=makeSimpleGraph ())
  displayGraph (cw)
  layoutNetwork(cw)
  directed = TRUE
  addCyEdge (cw, 'A', 'B', 'synthetic rescue', directed)

## End(Not run)

tmuetze/Bioconductor_RCy3_the_new_RCytoscape documentation built on May 31, 2019, 4:39 p.m.