createWindowFromSelection: createWindowFromSelection

In tmuetze/Bioconductor_RCy3_the_new_RCytoscape: Display and manipulate graphs in Cytoscape >= 3.3.0

Description

All selected nodes, their connecting edges, and associated attributes are copied into a new CytoscapeWindow, with the supplied title.

Usage

createWindowFromSelection(obj, new.windowTitle, return.graph)

Arguments

obj	a CytoscapeWindowClass object.
new.windowTitle	a String.
return.graph	an logical object.

Value

A new CytoscapeWindow object, with the graph slot populated with the new selected subgraph, if requested. If not requested, the graph slot holds an empty graph.

Author(s)

Tanja Muetze, Georgi Kolishovski, Paul Shannon

See Also

selectNodes

Examples

  ## Not run: 
  # first, delete existing windows to save memory:
  deleteAllWindows(CytoscapeConnection())

  cy <- CytoscapeConnection ()
  title <- 'createWindowFromSelection demo'

  cw <- CytoscapeWindow (title, makeSimpleGraph ())
  displayGraph (cw)
  layoutNetwork (cw)
  selectNodes (cw, c ('A', 'C'))
 
  new.window.title <- 'NEW WINDOW'
  c2 <- createWindowFromSelection (cw, new.window.title, TRUE)
  layoutNetwork (c2, 'force-directed')
  print (getEdgeCount(c2))  # should be 1

## End(Not run)

tmuetze/Bioconductor_RCy3_the_new_RCytoscape documentation built on May 31, 2019, 4:39 p.m.