CytoscapeWindowClass-class: Class "CytoscapeWindowClass"

In tmuetze/Bioconductor_RCy3_the_new_RCytoscape: Display and manipulate graphs in Cytoscape >= 3.3.0

Description

A class providing access to the Cytoscape application.

Slots

title:

An attrData, the name of the window.

window.id:

An attrData Cytoscape's identifier.

graph:

An attrData, a graph instance.

collectTimings:

A logical object.

suid.name.dict:

A list object.

edge.suid.name.dict:

A list object.

view.id:

A numeric object.

uri:

An attrData the address of the Cytoscape CyREST API.

Methods

createWindow

destroyWindow

destroyAllWindows

displayGraph

firstNeighbors

getArrowShapes

getLayoutNames

getLineStyles

getNodeShapes

getWindowCount

Author(s)

Tanja Muetze, Georgi Kolishovski, Paul Shannon

Examples

  ## Not run: 
  # first, delete existing windows to save memory:
  deleteAllWindows(CytoscapeConnection())

  # create a CytoscapeWindowClass object by calling the constructor
  c2 <- CytoscapeWindow ('cwc demo', makeSimpleGraph ())  


## End(Not run)

tmuetze/Bioconductor_RCy3_the_new_RCytoscape documentation built on May 31, 2019, 4:39 p.m.