full_processed_profile_large: An example of a large processed phylogenetic profile.

In trvinh/test: PhyloProfile

Description

An example of a large processed phylogenetic profile.

Usage

full_processed_profile_large

Format

A data frame with 80 rows and 9 variables:

• geneID Seed or ortholog group ID, e.g. "OG_1017"

• supertaxon Supertaxon name together with its ordered index, e.g. "1001_Mammalia"

• supertaxonID Supertaxon ID (only different than ncbiID in case working with higher taxonomy rank than input's). e.g. "40674"

• var1 First additional variable

• presSpec The percentage of species presenting in each supertaxon

• category "cat

• orthoID Ortholog ID, e.g. "M.musculus@10090@112934"

• var2 Second additional variable

• paralog Number of co-orthologs in the current taxon

trvinh/test documentation built on May 9, 2019, 2:26 a.m.