create_variable_distribution_data_subset: Create data for additional variable distribution (for a...
In trvinh/test: PhyloProfile

Description Usage Arguments Value Author(s) See Also Examples

Create data for additional variable distribution (for a subset data)

1 2	create_variable_distribution_data_subset(full_profile_data, distribution_data, selected_genes, selected_taxa)

`full_profile_data`	dataframe contains the full processed profiles
`distribution_data`	dataframe contains the full distribution data
`selected_genes`	list of genes of interst
`selected_taxa`	list of taxa of interest

A dataframe ready for analysing the distribution of the additional variable(s) for a subset of genes and/or taxa.

Vinh Tran tran@bio.uni-frankfurt.de

parse_info_profile, create_variable_distribution_data, full_processed_profile, main_long_raw

data("full_processed_profile", package="phyloprofile")
data("main_long_raw", package="phyloprofile")
distribution_data <- create_variable_distribution_data(
    main_long_raw, 0, 1, 0.5, 1
)
selected_genes <- "OG_1019"
selected_taxa <- c("Mammalia", "Echinoidea", "Gunneridae", "Mucorales",
"Alphaproteobacteria")
create_variable_distribution_data_subset(
    full_processed_profile,
    distribution_data,
    selected_genes,
    selected_taxa
)