create_archi_plot: Create protein's domain architecure plot
In trvinh/test: PhyloProfile

Description Usage Arguments Value Author(s) See Also Examples

Create architecture plot for both seed and orthologous protein. If domains of ortholog are missing, only architecture of seed protein will be plotted. NOTE: seed protein ID is the one being shown in the profile plot, which normally is also the orthologous group ID.

1	create_archi_plot(info, domain_df, label_archi_size, title_archi_size)

`info`	a list contains seed and orthologs IDs
`domain_df`	dataframe contains domain info
`label_archi_size`	lable size (in px)
`title_archi_size`	title size (in px)

A plot as arrangeGrob object. Use grid::grid.draw(plot) to render.

Vinh Tran tran@bio.uni-frankfurt.de

domain_plotting, sort_domains, parse_domain_input, get_qual_col_for_vector

seedID <- "OG_1009"
orthoID <- "A.thaliana@3702@241736"
info <- c(seedID, orthoID)
domain_file <- system.file(
    "extdata", "domain_files/OG_1009.domains",
    package = "phyloprofile", mustWork = TRUE
)
domain_df <- parse_domain_input(seedID, domain_file, "file")
plot <- create_archi_plot(info, domain_df, 9, 9)
grid::grid.draw(plot)