get_data_for_one_oma: Get OMA info for a query protein and its orthologs
In trvinh/test: PhyloProfile
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Get taxonomy IDs, sequences and annotations for an OMA
orthologous group (or OMA HOG).
Usage
1
get_data_for_one_oma(seed_id, ortho_type)
Arguments
seed_id
protein query ID in OMA or UniProt format
ortho_type
type of OMA orthologs
Value
data frame contains info for all sequences of that OMA group (or HOG)
Author(s)
Vinh Tran tran@bio.uni-frankfurt.de
Examples
1
get_data_for_one_oma("HUMAN29397", "OG")
trvinh/test documentation built on May 9, 2019, 2:26 a.m.
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Description Usage Arguments Value Author(s) Examples
Description
Get taxonomy IDs, sequences and annotations for an OMA orthologous group (or OMA HOG).
Usage
1 | get_data_for_one_oma(seed_id, ortho_type)
|
Arguments
seed_id |
protein query ID in OMA or UniProt format |
ortho_type |
type of OMA orthologs |
Value
data frame contains info for all sequences of that OMA group (or HOG)
Author(s)
Vinh Tran tran@bio.uni-frankfurt.de
Examples
1 | get_data_for_one_oma("HUMAN29397", "OG")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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