get_ids_rank: Get taxonomy info for a list of taxa

In trvinh/test: PhyloProfile

Description

Get NCBI taxonomy IDs, ranks and names for an input taxon list

Usage

get_ids_rank(input_taxa, currentNCBIinfo)

Arguments

input_taxa	input taxon list
currentNCBIinfo	table/dataframe of the current taxonomy data (taxonNamesFull.txt)

Value

A list of 3 dataframes: idList, rankList and reducedInfoList

Author(s)

Vinh Tran [e-mail]

Examples

input_taxa <- c("272557", "176299")
ncbi_filein <- system.file(
    "extdata", "data/taxonNamesFull.txt",
    package = "phyloprofile", mustWork = TRUE
)
currentNCBIinfo <- as.data.frame(data.table::fread(ncbi_filein))
get_ids_rank(input_taxa, currentNCBIinfo)

trvinh/test documentation built on May 9, 2019, 2:26 a.m.