Man pages for tsoleary/proteomixr
Label-free quantitative proteomics & D3-Leu turnover
| abun_ratio | Abundance ratio |
| all_isos | Isotopic Distribution for all Pools |
| by_group | Peptide average or standard deviation |
| by_protein | FUN by protein |
| combine_iso | Sums Isotopes from Different Pools |
| count_df | Count the degrees of freedom for each group |
| deg_syn | Degradation and Synthesis of a Peptide Over Time |
| gene_to_comp | Groups proteins by gene symbols into compartments or... |
| hello | Hello, World! |
| indiv_mpa_to_gene | Converts Accession to Gene Name for Individual Proteins |
| iso_dist | Distribution of D3-Leu peptides |
| iso_ratio_calc | "Corrected" Isotope Ratio |
| k_yf | K constant and Plateau from Non-Linear Fit |
| lin_fit | Linear fit result |
| lm_eqn | Linear Regression Equation Object |
| make_pools | Make pools for D3_0_old, D3_0_new, D3_1, D3_2 _etc._ Pools |
| mega_model | MEGA MODEL |
| mpa_to_gene | Convert master protein accession to gene symbol |
| norm_iso | Normalize Isotopes to the Sum |
| pep_iso | Peptide Isotopic Distribution |
| plot_all_isos | Plot the Isotopic Distribution Changing Over Time |
| plot_iso_r | Plot Isotopic Ratio |
| plot_pro | Plot proteins changing overtime |
| pool_iso_dist | Isotopic Distribution of a Pool |
| proteome | Proteome |
| pval_ttest | P-value of t-test between two groups for each protein group |
| ratio_sd | Standard deviation of a ratio of two means |
| rm_outliers | Remove outliers in peptide data |
| square_x_df | Pooled standard deviation calculation intermediate |
