deg_syn: Degradation and Synthesis of a Peptide Over Time
In tsoleary/proteomixr: Label-free quantitative proteomics & D3-Leu turnover
Description
Usage
Arguments
Examples
Description
How the pools change over time
Usage
1
deg_syn(dat, deg, syn, initial, D3_pep, D3_i)
Arguments
dat
a data frame containing columns with median peptide abundances
deg
degradation constant (k)
syn
synthesis rate (amount/time)
initial
abundance at T0
D3_pep
numeric vector containing the result from iso_dist
D3_i
specific isotope (i.e. 0 for "M+0", 1 for "M+1" etc.)
Examples
1
2
deg_syn(dat, f_deg, f_syn, f_initial, D3_pep,
D3_i = as.numeric(gsub("^D3_([0-9]+)_.*", "\\1", pool)))
tsoleary/proteomixr documentation built on July 19, 2019, 8:37 a.m.
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Description Usage Arguments Examples
Description
How the pools change over time
Usage
1 | deg_syn(dat, deg, syn, initial, D3_pep, D3_i)
|
Arguments
dat |
a data frame containing columns with median peptide abundances |
deg |
degradation constant (k) |
syn |
synthesis rate (amount/time) |
initial |
abundance at T0 |
D3_pep |
numeric vector containing the result from iso_dist |
D3_i |
specific isotope (i.e. 0 for "M+0", 1 for "M+1" etc.) |
Examples
1 2 | deg_syn(dat, f_deg, f_syn, f_initial, D3_pep,
D3_i = as.numeric(gsub("^D3_([0-9]+)_.*", "\\1", pool)))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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