Files in ttriche/chromophobe
Explore genomic state models, predictions, sample compositions & overlaps
DESCRIPTION
Makefile
NAMESPACE
R/AllClasses.R
R/addColors.R
R/addRoadmapColors.R
R/aggregateStates.R
R/asRaggedExperiment.R
R/collapseAt.R
R/colorHMM.R
R/compressAndExportHMM.R
R/donutPlot.R
R/genomeFrac.R
R/getConditions.R
R/getStackedState.R
R/getState.R
R/getStates.R
R/importAndSimplifyHMM.R
R/makeAndExportDisjointHMM.R
R/makeAndExportStackedHMM.R
R/regionFrac.R
R/simplifyHMM.R
R/stackHMMs.R
R/stackedPlot.R
README.md
data/FDFT1.rda
data/blueprint12state.rda
data/chr19_HMM.rda
data/hg18ToHg19.rda
data/hg19.islands.rda
data/remc18state.rda
data/remc25state.rda
data/simpleY.rda
data/snpLocs.450k.rda
data/stacked100state.rda
inst/extdata/colors100state.tsv
inst/extdata/colors12state.tsv
inst/extdata/colors18state.tsv
inst/extdata/colors25state.tsv
inst/extdata/process_stackHMM.R
inst/extdata/stackHMM_state_annotations_processed.csv
man/GenomicSegmentation.Rd
man/GenomicSegmentationList.Rd
man/addRoadmapColors.Rd
man/aggregateStates.Rd
man/asRaggedExperiment.Rd
man/chromophobe-package.Rd
man/collapseAt.Rd
man/colorHMM.Rd
man/compressAndExportHMM.Rd
man/donutPlot.Rd
man/genomeFrac.Rd
man/getConditions.Rd
man/getStackedState.Rd
man/getState.Rd
man/getStates.Rd
man/importAndSimplifyHMM.Rd
man/makeAndExportDisjointHMM.Rd
man/makeAndExportStackedHMM.Rd
man/regionFrac.Rd
man/simplifyHMM.Rd
man/stackHMMs.Rd
man/stackedPlot.Rd
src/chromophobe.so
src/parseScChromHMM.cpp
