stackHMMs: build a poor man's stacked HMM

In ttriche/chromophobe: Explore genomic state models, predictions, sample compositions & overlaps

build a poor man's stacked HMM

Description

build a poor man's stacked HMM

Usage

stackHMMs(
  HMMs,
  djHMM = NULL,
  cols = NULL,
  simple = TRUE,
  only3 = FALSE,
  verbose = FALSE,
  BPPARAM = SerialParam()
)

Arguments

HMMs	a GRangesList of HMMs
djHMM	optional disjoint HMM (else one will be assembled)
cols	optional color key (else a default simpleCols will be used)
simple	simplify? (default is TRUE, you're on your own if it's FALSE)
only3	keep only 'name', 'thick', 'itemRgb' as mcols? (FALSE)
verbose	be verbose? (FALSE)
BPPARAM	BiocParallel object (default is SerialParam())

Value

a GRanges of stacked HMM states (one or more per segment)

ttriche/chromophobe documentation built on Oct. 14, 2024, 11:59 a.m.