getStackedState: pull out ranges from a stacked HMM that differ by condition...
In ttriche/chromophobe: Explore genomic state models, predictions, sample compositions & overlaps
View source: R/getStackedState.R
getStackedState R Documentation
pull out ranges from a stacked HMM that differ by condition (":" in names)
Description
pull out ranges from a stacked HMM that differ by condition (":" in names)
Usage
getStackedState(stacked, state = "Bivalent")
Arguments
stacked
the stacked HMM
state
the state of interest (default is "Bivalent")
Details
Try subsetOverlaps(stacked, getStackedState(stacked,state))
Value
a GRanges with the state for each condition in mcols()
ttriche/chromophobe documentation built on Oct. 14, 2024, 11:59 a.m.
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View source: R/getStackedState.R
| getStackedState | R Documentation |
pull out ranges from a stacked HMM that differ by condition (":" in names)
Description
pull out ranges from a stacked HMM that differ by condition (":" in names)
Usage
getStackedState(stacked, state = "Bivalent")
Arguments
stacked |
the stacked HMM |
state |
the state of interest (default is "Bivalent") |
Details
Try subsetOverlaps(stacked, getStackedState(stacked,state))
Value
a GRanges with the state for each condition in mcols()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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