aggregateStates: merge segments that are all in a row, but avoid slopping...

In ttriche/chromophobe: Explore genomic state models, predictions, sample compositions & overlaps

merge segments that are all in a row, but avoid slopping across chroms

Description

merge segments that are all in a row, but avoid slopping across chroms

Usage

aggregateStates(HMM, only3 = FALSE, verbose = FALSE, BPPARAM = SerialParam())

Arguments

HMM	a ChromHMM GRanges
only3	keep only 'name', 'thick', 'itemRgb' as mcols? (FALSE)
verbose	prattle endlessly about which contig we're on? (FALSE)
BPPARAM	BiocParallel object (default is SerialParam())

Value

HMM but without unnecessary segmentations (or mcols)

ttriche/chromophobe documentation built on Oct. 14, 2024, 11:59 a.m.