Man pages for uc-bd2k/gimmR
This package was built to cluster gene expression data using
the Gaussian Infinite Mixture Model.
| 1introduction | Introduciton to GimmR |
| computeDCEscore | A wrapper function to compute the DCE score given two... |
| convTxtToInp | This function converts the Gene data in Txt file to Inp... |
| correctCdt | Function corrects the CDT file generated by posthoc. |
| cutTree | This function produces a new tree based upon the given... |
| DCE500 | Gene expression dataset containing top 500 differentially... |
| deleteFiles | Function that deletes intermediate files upon user's request. |
| drawHeatmap | This function draws a heatmap based on given gimmR object. |
| exportCdt | Functions to generate fTreeView files |
| GalData | Contains table object data which can be used in... |
| generateLocalPPPs | Wrapper function to compute local pairwise posterior... |
| getAllClusters | Generate a list of all possible clusters from a hierarchical... |
| getBinarySubTree | Get the left or right subtree of a given hierarchical... |
| getOnlyFileName | Funciton to extract filename without any extension and path. |
| getPerm | Gets all the permutations from .gtr file |
| gimmRFromPos | Method to create gimmR object corresponding to .pos file. |
| importCdt | Functions to import files in TreeView format into R. |
| PrimgCho | Contains table object data which can be used in... |
| readMpm | Generates the Table object for .mpm file. |
| runGimm | This function prepares parameters for running executable... |
| runGimmNPosthoc | This function makes the System Calls to "gimm" and "posthoc"... |
| runPosthoc | This function prepares parameters for running executable... |
| splitMatrix | Split a matrix into sub matrices. |
| tableToInp | Function to convert Gene data table object to Inp format. |
