cutTree: This function produces a new tree based upon the given...

In uc-bd2k/gimmR: This package was built to cluster gene expression data using the Gaussian Infinite Mixture Model.

Description

This function cuts the given tree bease upon the height provided by the user. The dataset containing new tree is rebundled and returned to the user.

Usage

	cutTree(gimmR, dataFile="Result", heat = FALSE, h = 0.05129625, nGenes)

Arguments

gimmR	This is the list of the all data returned after running gimm and posthoc related methods. This contains the hGClustData and clustData.
dataFile	The name of the file with extension .zm
heat	If true, the heatmap will be produced after cutting the tree at the given height
h	Height where the tree should be cut.
nGenes	Number of genes to be clustered.

Details

This function cut the given tree bease upon the height provided by the user. User can see the heatmap of new tree by keeping the flag "heat" as true. The dataset containing new tree is rebundled and returned to the user.In this list, clustData as well as hGClustData will change.

Note

Email Address : [e-mail]

Author(s)

Mario Medvedovic, Vinayak Kumar

See Also

runGimmNPosthoc, runGimm, runPosthoc

uc-bd2k/gimmR documentation built on May 3, 2019, 2:15 p.m.