Man pages for uc-bd2k/gimmR
This package was built to cluster gene expression data using the Gaussian Infinite Mixture Model.

1introductionIntroduciton to GimmR
computeDCEscoreA wrapper function to compute the DCE score given two...
convTxtToInpThis function converts the Gene data in Txt file to Inp...
correctCdtFunction corrects the CDT file generated by posthoc.
cutTreeThis function produces a new tree based upon the given...
DCE500Gene expression dataset containing top 500 differentially...
deleteFilesFunction that deletes intermediate files upon user's request.
drawHeatmapThis function draws a heatmap based on given gimmR object.
exportCdtFunctions to generate fTreeView files
GalDataContains table object data which can be used in...
generateLocalPPPsWrapper function to compute local pairwise posterior...
getAllClustersGenerate a list of all possible clusters from a hierarchical...
getBinarySubTreeGet the left or right subtree of a given hierarchical...
getOnlyFileNameFunciton to extract filename without any extension and path.
getPermGets all the permutations from .gtr file
gimmRFromPosMethod to create gimmR object corresponding to .pos file.
importCdtFunctions to import files in TreeView format into R.
PrimgChoContains table object data which can be used in...
readMpmGenerates the Table object for .mpm file.
runGimmThis function prepares parameters for running executable...
runGimmNPosthocThis function makes the System Calls to "gimm" and "posthoc"...
runPosthocThis function prepares parameters for running executable...
splitMatrixSplit a matrix into sub matrices.
tableToInpFunction to convert Gene data table object to Inp format.
uc-bd2k/gimmR documentation built on May 27, 2017, 5:57 p.m.