correctCdt: Function corrects the CDT file generated by posthoc.

In uc-bd2k/gimmR: This package was built to cluster gene expression data using the Gaussian Infinite Mixture Model.

Description

This function is used to correct the .cdt file generated by the "posthoc" executable.

Usage

correctCdt(geneDataFromTxt, fileName="", nreplicates=1, atr=NULL)

Arguments

geneDataFromTxt	This object represents the original gene data.
fileName	This file should be present in the current folder. The filename can contain anything, but only the name of teh file without any path and extension will be used to track .cdt file.
nreplicates
atr	If NULL, this paramter is ignored. Otherwise, 'atr' is assumed to be a hierarchical clustering (hclust object) of the samples (columns) represented in the .cdt file.

Value

This functions returns a matrix object containing all the rows in .cdt file.

Note

Email Address : [e-mail]

Author(s)

Vinayak Kumar, Mario Medvedovic

See Also

processPostHocParas, runGimmNPosthoc, processGimmParas

uc-bd2k/gimmR documentation built on May 3, 2019, 2:15 p.m.