Files in uebvhir/BasicP4microArrays
Functions to create and run simple-to-complex microarray analysis pipeline
.Rbuildignore
.gitignore
BasicP4microArrays.Rproj
DESCRIPTION
NAMESPACE
R/GeneAnnotation.R
R/GoAnalysis.R
R/KEGGAnalysis.R
R/clusterAnalysis.R
R/createOrLoadAnnotations.R
R/doClusterAnalysis.R
R/doGOAnalysis.R
R/doGeneAnnotation.R
R/doKEGGAnalysis.R
R/doLmAnalysis.R
R/doMultCompAnalysis.R
R/filterData.R
R/globals.R
R/lmAnalysis.R
R/multipleComp.R
R/normalization.R
R/normplots2File.R
R/readOrLoad.RawData.R
R/saveData.R
README.md
inst/packagesInstaller.R
man/GOAnalysis.Rd
man/GeneAnnotation..Rd
man/KEGGAnalysis.Rd
man/clusterAnalysis.Rd
man/createOrLoadAnnotations.Rd
man/doClusterAnalysis.Rd
man/doGOAnalysis.Rd
man/doGeneAnnotation.Rd
man/doKEGGAnalysis.Rd
man/doLmAnalysis.Rd
man/doMultCompAnalysis.Rd
man/filterData.Rd
man/lmAnalysis.Rd
man/multipleComp.Rd
man/normalization.Rd
man/normplots2File.Rd
man/readOrLoad.RawData.Rd
man/saveData.Rd
vignettes/BasicP4microArrays-vignette.Rmd
vignettes/BasicP4microArrays-vignette.html
vignettes/Links.txt
vignettes/ResultsDir/Annotations-sortable.html
vignettes/ResultsDir/Entrezs.Rda
vignettes/ResultsDir/Estudi.AvsB.html
vignettes/ResultsDir/Estudi.AvsL.html
vignettes/ResultsDir/Estudi.BvsL.html
vignettes/ResultsDir/ExpressAndTop.Estudi.AvsB.csv
vignettes/ResultsDir/ExpressAndTop.Estudi.AvsL.csv
vignettes/ResultsDir/ExpressAndTop.Estudi.BvsL.csv
vignettes/ResultsDir/FilteringReport.txt
vignettes/ResultsDir/HeatMap.Compar 1.pdf
vignettes/ResultsDir/NormalizedPlots.pdf
vignettes/ResultsDir/SignificantGO.Estudi.AvsB.Down-sortable.html
vignettes/ResultsDir/SignificantGO.Estudi.AvsB.Down.html
vignettes/ResultsDir/SignificantGO.Estudi.AvsB.Up-sortable.html
vignettes/ResultsDir/SignificantGO.Estudi.AvsB.Up.html
vignettes/ResultsDir/SignificantGO.Estudi.AvsL.Down-sortable.html
vignettes/ResultsDir/SignificantGO.Estudi.AvsL.Down.html
vignettes/ResultsDir/SignificantGO.Estudi.AvsL.Up-sortable.html
vignettes/ResultsDir/SignificantGO.Estudi.AvsL.Up.html
vignettes/ResultsDir/SignificantGO.Estudi.BvsL.Down-sortable.html
vignettes/ResultsDir/SignificantGO.Estudi.BvsL.Down.html
vignettes/ResultsDir/SignificantGO.Estudi.BvsL.Up-sortable.html
vignettes/ResultsDir/SignificantGO.Estudi.BvsL.Up.html
vignettes/ResultsDir/SignificantKEGG.Estudi.AvsB-sortable.html
vignettes/ResultsDir/SignificantKEGG.Estudi.AvsB.html
vignettes/ResultsDir/SignificantKEGG.Estudi.AvsL-sortable.html
vignettes/ResultsDir/SignificantKEGG.Estudi.AvsL.html
vignettes/ResultsDir/SignificantKEGG.Estudi.BvsL-sortable.html
vignettes/ResultsDir/SignificantKEGG.Estudi.BvsL.html
vignettes/ResultsDir/Symbols.Rda
vignettes/ResultsDir/asc.gif
vignettes/ResultsDir/bg.gif
vignettes/ResultsDir/controls.Rda
vignettes/ResultsDir/desc.gif
vignettes/ResultsDir/expres.Rda
vignettes/ResultsDir/exprs.filtered.Rda
vignettes/ResultsDir/fit.Rda
vignettes/ResultsDir/geneList.Group1.pvalues.LT.0.01.Rda
vignettes/ResultsDir/genesInClusters.Compar 1.csv
vignettes/ResultsDir/jquery-1.4.2.js
vignettes/ResultsDir/jquery.tablesorter.js
vignettes/ResultsDir/multComp.Group1.csv
vignettes/ResultsDir/normalized.all.csv
vignettes/ResultsDir/normalized.filtered.csv
vignettes/ResultsDir/normalizedData.Rda
vignettes/ResultsDir/numGenesChanged.Estudi.csv
vignettes/ResultsDir/style.css
vignettes/ResultsDir/venn.Group1.pdf
vignettes/ResultsDir/volcano.Estudi.AvsB.pdf
vignettes/ResultsDir/volcano.Estudi.AvsL.pdf
vignettes/ResultsDir/volcano.Estudi.BvsL.pdf
vignettes/datafiles-ex1/GSM26878.CEL
vignettes/datafiles-ex1/GSM26879.CEL
vignettes/datafiles-ex1/GSM26883.CEL
vignettes/datafiles-ex1/GSM26887.CEL
vignettes/datafiles-ex1/GSM26888.CEL
vignettes/datafiles-ex1/GSM26889.CEL
vignettes/datafiles-ex1/GSM26892.CEL
vignettes/datafiles-ex1/GSM26896.CEL
vignettes/datafiles-ex1/GSM26897.CEL
vignettes/datafiles-ex1/GSM26898.CEL
vignettes/datafiles-ex1/GSM26903.CEL
vignettes/datafiles-ex1/GSM26906.CEL
vignettes/datafiles-ex1/GSM26907.CEL
vignettes/datafiles-ex1/GSM26910.CEL
vignettes/datafiles-ex1/GSM26911.CEL
vignettes/datafiles-ex1/targets.txt
vignettes/rawData.Rda
