API for umerijaz/microbiomeSeq
Microbial community analysis in an environmental context.

Global functions
KDA Man page Source code
alpha_div Man page Source code
among_module_connectivity Source code
assign_module_roles Source code
beta_disper Source code
co_occur_pairs Source code
co_occurence_network Man page Source code
comm_stats Source code
construct_network Source code
deseq_varstab Source code
differential_abundance Man page Source code
edgeRnorm Source code
formatPvalues Source code
generateFSO Man page Source code
get.num.variables Source code
identify.num.variables Source code
kruskal_abundance Man page Source code
log_relative Source code
microbiomeseq_cols Source code
module.roles Man page Source code
module_env_correlation Man page Source code
network_correlation Source code
network_degree Source code
normalise_data Man page Source code
ordination Man page Source code
p.adjust.cor Source code
participation_coeffiecient Source code
perform_anova Man page Source code
plot.ordination Man page Source code
plot_MA Source code
plot_MDA Source code
plot_adonis_res Source code
plot_anova_diversity Man page Source code
plot_anova_env Man page Source code
plot_betadisper Source code
plot_betweenness_eigenvalue Source code
plot_cca Man page Source code
plot_corrections Source code
plot_kda Source code
plot_ordisurf Source code
plot_roles Source code
plot_signif Man page Source code
plot_taxa Man page Source code
plot_taxa_env Source code
proportion Source code
randomforest_res Man page Source code
randomsubsample Source code
relative Source code
scale.meta Source code
select.vars Source code
sim.abund Source code
sim.binary Source code
st.acr Source code
tables.correlate Source code
taxa.env.correlation Man page Source code
taxa_level Man page Source code
top.taxa Source code
within_module_degree Source code
zscore Source code
umerijaz/microbiomeSeq documentation built on Jan. 22, 2018, 3:37 p.m.