Man pages for umerijaz/microbiomeSeq
Microbial community analysis in an environmental context.

alpha_divAlpha diversity measure
co_occurence_networkCo-occurence network
differential_abundanceDifferential abundance analysis
generateFSOFuzzy Set Ordination
KDAkernel-based differential analysis
kruskal_abundanceKruskal-Wallis differential abundance analysis
module_env_correlationRelationship between sub-communities and environment
module.rolesModule roles
normalise_dataData normalisation
ordinationOrdination and beta dispersion
perform_anovapairwise ANOVA
plot_anova_diversityAlpha diversity with ANOVA
plot_anova_envANOVA of environmental variables
plot_ccaCanonical Correspondence Analysis plot
plot.ordinationOrdination plots
plot_signifPlotting Significant features data
plot_taxaLocal Contribution to Beta Diversity (LCBD)
randomforest_resImportance of significant features.
taxa.env.correlationTaxa-Environment correlation
taxa_levelTaxa level collating
umerijaz/microbiomeSeq documentation built on May 30, 2019, 3:13 p.m.