Description Usage Arguments Value Author(s) References Examples
This function finds a set of best environmental variables that describe community structure superimposes them on the ordination plot.
1 2 3 |
'physeq' |
is a required phyloseq object containing taxa abundance and meta data. |
'grouping_column' |
is the variable in the meta data with respect to which the data should be grouped, |
'pvalueCutoff' |
the threshold p-value in 'anova' of distance matrices, default set to '0.05'. |
'env.variables' |
is a list of variables prefered to be on the cca plot. |
'exclude.variables' |
a list of variables to be excluded from the cca plot. |
'num.env.variables' |
is an integer specifying the number of variables to show on the cca plot. |
A ggplot object
Alfred Ssekagiri assekagiri@gmail.com, Umer Zeeshan Ijaz Umer.Ijaz@glasgow.ac.uk
http://userweb.eng.gla.ac.uk/umer.ijaz/, Umer Ijaz, 2015
1 2 3 |
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.