perform_anova: pairwise ANOVA
In umerijaz/microbiomeSeq: Microbial community analysis in an environmental context.
Description
Usage
Arguments
Value
Author(s)
References
Description
This function performs ANOVA of a given measure in specified groups, in addition it
also performs pairwise ANOVA of the measure between possible pairs of levels in the grouping variable. It returns
p-values obtained.
Usage
1
perform_anova(df, meta_table, grouping_column, pValueCutoff)
Arguments
df
(Required). A data.frame containg measures a measure to be analysed.
meta_table
(Required). A data frame containing atleast one variable (grouping variable).
grouping_column
(Required). A character string specifying name of the grouping variable in the supplied meta table.
Value
It returns a list of two data frames: One being p-values obtained from the pairwise ANOVA of
the measure and levels of grouping variable , the other is containing updated measure.
Author(s)
Alfred Ssekagiri assekagiri@gmail.com,Umer Zeeshan Ijaz Umer.Ijaz@glasgow.ac.uk
References
http://userweb.eng.gla.ac.uk/umer.ijaz/, Umer Ijaz, 2015
umerijaz/microbiomeSeq documentation built on May 30, 2019, 3:13 p.m.
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Description Usage Arguments Value Author(s) References
Description
This function performs ANOVA of a given measure in specified groups, in addition it also performs pairwise ANOVA of the measure between possible pairs of levels in the grouping variable. It returns p-values obtained.
Usage
1 | perform_anova(df, meta_table, grouping_column, pValueCutoff)
|
Arguments
df |
(Required). A |
meta_table |
(Required). A data frame containing atleast one variable (grouping variable). |
grouping_column |
(Required). A character string specifying name of the grouping variable in the supplied meta table. |
Value
It returns a list of two data frames: One being p-values obtained from the pairwise ANOVA of the measure and levels of grouping variable , the other is containing updated measure.
Author(s)
Alfred Ssekagiri assekagiri@gmail.com,Umer Zeeshan Ijaz Umer.Ijaz@glasgow.ac.uk
References
http://userweb.eng.gla.ac.uk/umer.ijaz/, Umer Ijaz, 2015
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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