Man pages for umerijaz/microbiomeSeq
Microbial community analysis in an environmental context.
| alpha_div | Alpha diversity measure |
| co_occurence_network | Co-occurence network |
| differential_abundance | Differential abundance analysis |
| generateFSO | Fuzzy Set Ordination |
| KDA | kernel-based differential analysis |
| kruskal_abundance | Kruskal-Wallis differential abundance analysis |
| module_env_correlation | Relationship between sub-communities and environment |
| module.roles | Module roles |
| normalise_data | Data normalisation |
| ordination | Ordination and beta dispersion |
| perform_anova | pairwise ANOVA |
| plot_anova_diversity | Alpha diversity with ANOVA |
| plot_anova_env | ANOVA of environmental variables |
| plot_cca | Canonical Correspondence Analysis plot |
| plot.ordination | Ordination plots |
| plot_signif | Plotting Significant features data |
| plot_taxa | Local Contribution to Beta Diversity (LCBD) |
| randomforest_res | Importance of significant features. |
| taxa.env.correlation | Taxa-Environment correlation |
| taxa_level | Taxa level collating |
