Man pages for unistbig/compareDEtools
Comparison of multiple DE analysis methods in R
| baySeq.createRmd | Generate a '.Rmd' file containing code to perform... |
| correlation_heatmap | make correlation heatmap function |
| DEanalysis-package | Differential expression analysis and performance test on... |
| DESeq2.createRmd | Generate a '.Rmd' file containing code to perform... |
| DESeq.nbinom.createRmd | Generate a '.Rmd' file containing code to perform... |
| edgeR.exact.createRmd | Generate a '.Rmd' file containing code to perform... |
| edgeR.GLMQL.createRmd | Generate a '.Rmd' file containing code to perform... |
| edgeR.GLM.Robust.createRmd | Generate a '.Rmd' file containing code to perform... |
| fpc_performance_plot | make synthetic data False Positive count plot function |
| generateDatasetParameter | Generate List containing estimated mean and dispersion... |
| GenerateRealSimulation | Generation of Real simulation files |
| GenerateSyntheticSimulation | Generation of Synthetic simulation files |
| getDisp | Get random dispersion value based on the read count size... |
| listcreateRmd | List available *.createRmd functions |
| performance_plot | make synthetic data plot function |
| performance_realdata_plot | make realdata plot function |
| PoissonSeq.createRmd | Generate a '.Rmd' file containing code to perform... |
| RealDataSimulation | Generate real data for analysis |
| ROTS.createRmd | Generate a '.Rmd' file containing code to perform... |
| run_PCA | run PCA |
| runSimulationAnalysis | Run Analysismethods |
| SAMseq.createRmd | Generate a '.Rmd' file containing code to perform... |
| select_color | color selector |
| select_tool | tool selector |
| simul_methods | Run Analysismethods |
| SyntheticDataSimulation | Generate synthetic count data for analysis |
| voom.limma.createRmd | Generate a '.Rmd' file containing code to perform... |
| voom.qn.limma.createRmd | Generate a '.Rmd' file containing code to perform... |
| voom.sw.limma.createRmd | Generate a '.Rmd' file containing code to perform... |
