simul_methods: Run Analysismethods

In unistbig/compareDEtools: Comparison of multiple DE analysis methods in R

Description

Run Analysismethods

Usage

simul_methods(obj, output.dir, AnalysisMethods, para = list())

Arguments

obj	Name and place of input files.
output.dir	Result file save location.
AnalysisMethods	DEmethods used for figures. Input as character vectors (e.g. 'edgeR','edgeR.ql','edgeR.rb','DESeq.pd','DESeq2','voom.tmm','voom.qn','voom.sw','ROTS','BaySeq','BaySeq.qn,'PoissonSeq','SAMseq')
para	A list parameter consists of multiple lists corresponding each method. Each method list contains multiple parameters to run each DE analysis method.

unistbig/compareDEtools documentation built on May 1, 2020, 9:41 p.m.