correlation_heatmap: make correlation heatmap function

In unistbig/compareDEtools: Comparison of multiple DE analysis methods in R

Description

make correlation heatmap function

Usage

correlation_heatmap(working.dir, figure.dir, simul.data, nsample, topgenes,
  AnalysisMethods, rep)

Arguments

working.dir	Input file location.
figure.dir	Figure save location.
simul.data	Type of dataset(e.g. KIRC and Bottomly)
nsample	Number of samples. Input as a number.
topgenes	Number of top significant genes obtained from each methods to estimate rank correlation.
AnalysisMethods	DEmethods used for figures. Input as a character vector. (e.g. 'edgeR','edgeR.ql','edgeR.rb','DESeq.pd','DESeq2','voom.tmm','voom.qn','voom.sw','ROTS','BaySeq','PoissonSeq','SAMseq')
rep	Number of replication each test contain.

unistbig/compareDEtools documentation built on May 1, 2020, 9:41 p.m.