performance_realdata_plot: make realdata plot function

In unistbig/compareDEtools: Comparison of multiple DE analysis methods in R

Description

make realdata plot function

Usage

performance_realdata_plot(working.dir, figure.dir, simul.data, rep,
  nsample, rowType, AnalysisMethods)

Arguments

working.dir	Input file location
figure.dir	Figure save location
simul.data	Type of dataset (e.g. KIRC ,Bottomly and SEQC)
rep	Number of replication each test contain.
nsample	Number of samples. Input as a numeric vector.
rowType	Type of measures. Combination of DetectedDE and FPC. (e.g. c('DetectedDE','FP.count'))
AnalysisMethods	DEmethods used for figures. Input as character vectors (e.g. 'edgeR','edgeR.ql','edgeR.rb','DESeq.pd','DESeq2','voom.tmm','voom.qn','voom.sw','ROTS','BaySeq','PoissonSeq','SAMseq')

unistbig/compareDEtools documentation built on May 1, 2020, 9:41 p.m.